Detailed information of SNP:
|
SNP ID:
sf0506943652(Gbrowse)
Chromosome: chr05 Position: 6943652 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 51.82% | 48.18% |
| All Indica | 755 | 83.58% | 16.42% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 350 | 87.43% | 12.57% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 194 | 81.96% | 18.04% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506943652 | G->A | LOC_Os05g12150(LOC_Os05g12150.1) | INTRON |