Detailed information of SNP:
|
SNP ID:
sf0506944603(Gbrowse)
Chromosome: chr05 Position: 6944603 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.15% | 42.85% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506944603 | G->A | INTERGENIC | None |