Detailed information of SNP:
|
SNP ID:
sf0506970452(Gbrowse)
Chromosome: chr05 Position: 6970452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 30.00% | 70.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506970452 | C->T | INTERGENIC | None |