Detailed information of SNP:
|
SNP ID:
sf0506971479(Gbrowse)
Chromosome: chr05 Position: 6971479 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506971479 | G->A | INTERGENIC | None |