Detailed information of SNP:
|
SNP ID:
sf0506979516(Gbrowse)
Chromosome: chr05 Position: 6979516 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.41% | 45.59% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506979516 | A->G | INTERGENIC | None |