Detailed information of SNP:
|
SNP ID:
sf0506994431(Gbrowse)
Chromosome: chr05 Position: 6994431 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.77% | 42.23% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506994431 | A->T | INTERGENIC | None |