Detailed information of SNP:
|
SNP ID:
sf0506999845(Gbrowse)
Chromosome: chr05 Position: 6999845 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 57.41% | 42.59% |
| All Indica | 793 | 91.42% | 8.58% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 210 | 81.43% | 18.57% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506999845 | G->T | INTERGENIC | None |