Detailed information of SNP:
|
SNP ID:
sf0507003034(Gbrowse)
Chromosome: chr05 Position: 7003034 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 78.11% | 21.89% |
| All Indica | 797 | 80.18% | 19.82% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507003034 | A->G | INTERGENIC | None |