Detailed information of SNP:
|
SNP ID:
sf0507006172(Gbrowse)
Chromosome: chr05 Position: 7006172 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 798 | 26.32% | 73.68% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507006172 | T->A | INTERGENIC | None |