Detailed information of SNP:
|
SNP ID:
sf0507006849(Gbrowse)
Chromosome: chr05 Position: 7006849 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 798 | 90.73% | 9.27% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507006849 | A->T | INTERGENIC | None |