Detailed information of SNP:
|
SNP ID:
sf0507010777(Gbrowse)
Chromosome: chr05 Position: 7010777 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507010777 | G->A | INTERGENIC | None |