Detailed information of SNP:
|
SNP ID:
sf0507018682(Gbrowse)
Chromosome: chr05 Position: 7018682 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 67.85% | 32.15% |
| All Indica | 794 | 51.13% | 48.87% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 56 | 35.71% | 64.29% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 206 | 71.84% | 28.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507018682 | A->C | INTERGENIC | None |