Detailed information of SNP:
|
SNP ID:
sf0507026945(Gbrowse)
Chromosome: chr05 Position: 7026945 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 53.32% | 46.68% |
| All Japonica | 497 | 62.98% | 37.02% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507026945 | G->T | INTERGENIC | None |