Detailed information of SNP:
SNP ID:
sf0507051136(Gbrowse)
Chromosome: chr05 Position: 7051136 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1332 | 97.75% | 2.25% |
All Indica | 798 | 100.00% | 0.00% |
All Japonica | 412 | 92.72% | 7.28% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 212 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 261 | 88.51% | 11.49% |
Tropical Japonica | 89 | 100.00% | 0.00% |
Japonica Intermediate | 62 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0507051136 | A->T | INTERGENIC | None |