Detailed information of SNP:
|
SNP ID:
sf0507057452(Gbrowse)
Chromosome: chr05 Position: 7057452 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 95.23% | 4.77% |
| All Indica | 766 | 91.91% | 8.09% |
| All Japonica | 459 | 99.78% | 0.22% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 192 | 84.90% | 15.10% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 311 | 99.68% | 0.32% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507057452 | A->T | LOC_Os05g12290(LOC_Os05g12290.1) | INTRON |