Detailed information of SNP:
|
SNP ID:
sf0507062534(Gbrowse)
Chromosome: chr05 Position: 7062534 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.64% | 5.36% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507062534 | C->T | LOC_Os05g12300(LOC_Os05g12300.2) | Non-Synonymous SNP |
| sf0507062534 | C->T | LOC_Os05g12300(LOC_Os05g12300.3) | Non-Synonymous SNP |
| sf0507062534 | C->T | LOC_Os05g12300(LOC_Os05g12300.1) | Non-Synonymous SNP |