Detailed information of SNP:
|
SNP ID:
sf0507070770(Gbrowse)
Chromosome: chr05 Position: 7070770 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.87% | 26.13% |
| All Indica | 798 | 72.81% | 27.19% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507070770 | T->C | INTERGENIC | None |