Detailed information of SNP:
|
SNP ID:
sf0507073881(Gbrowse)
Chromosome: chr05 Position: 7073881 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.85% | 26.15% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 495 | 27.88% | 72.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507073881 | A->G | INTERGENIC | None |