Detailed information of SNP:
|
SNP ID:
sf0507073937(Gbrowse)
Chromosome: chr05 Position: 7073937 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 73.71% | 26.29% |
| All Indica | 797 | 72.52% | 27.48% |
| All Japonica | 495 | 77.98% | 22.02% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507073937 | A->C | INTERGENIC | None |