Detailed information of SNP:
|
SNP ID:
sf0507074424(Gbrowse)
Chromosome: chr05 Position: 7074424 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 94.42% | 5.58% |
| All Indica | 780 | 90.51% | 9.49% |
| All Japonica | 479 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 199 | 83.42% | 16.58% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507074424 | T->G | INTERGENIC | None |