Detailed information of SNP:
|
SNP ID:
sf0507078567(Gbrowse)
Chromosome: chr05 Position: 7078567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 61.49% | 38.51% |
| All Indica | 791 | 41.72% | 58.28% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 368 | 26.90% | 73.10% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507078567 | G->A | INTERGENIC | None |