Detailed information of SNP:
|
SNP ID:
sf0507088647(Gbrowse)
Chromosome: chr05 Position: 7088647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.49% | 30.51% |
| All Indica | 799 | 67.21% | 32.79% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507088647 | C->T | INTERGENIC | None |