Detailed information of SNP:
|
SNP ID:
sf0507091092(Gbrowse)
Chromosome: chr05 Position: 7091092 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 74.04% | 25.96% |
| All Indica | 792 | 99.37% | 0.63% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507091092 | T->C | LOC_Os05g12340(LOC_Os05g12340.1) | Non-Synonymous SNP |