Detailed information of SNP:
|
SNP ID:
sf0507091221(Gbrowse)
Chromosome: chr05 Position: 7091221 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 65.76% | 34.24% |
| All Indica | 790 | 94.43% | 5.57% |
| All Japonica | 483 | 23.19% | 76.81% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 332 | 4.82% | 95.18% |
| Tropical Japonica | 86 | 77.91% | 22.09% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507091221 | T->C | LOC_Os05g12340(LOC_Os05g12340.1) | Non-Synonymous SNP |