Detailed information of SNP:
|
SNP ID:
sf0507092679(Gbrowse)
Chromosome: chr05 Position: 7092679 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 71.95% | 28.05% |
| All Indica | 796 | 97.61% | 2.39% |
| All Japonica | 495 | 25.86% | 74.14% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507092679 | A->G | LOC_Os05g12340(LOC_Os05g12340.1) | Non-Synonymous SNP |