Detailed information of SNP:
|
SNP ID:
sf0507093434(Gbrowse)
Chromosome: chr05 Position: 7093434 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 93.35% | 6.65% |
| All Indica | 741 | 90.01% | 9.99% |
| All Japonica | 488 | 97.95% | 2.05% |
| Aus | 59 | 93.22% | 6.78% |
| Indica I | 348 | 91.09% | 8.91% |
| Indica II | 195 | 85.13% | 14.87% |
| Indica Intermediate | 198 | 92.93% | 7.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 89.53% | 10.47% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507093434 | A->G | LOC_Os05g12340(LOC_Os05g12340.1) | Synonymous |