Detailed information of SNP:
|
SNP ID:
sf0507097131(Gbrowse)
Chromosome: chr05 Position: 7097131 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 97.65% | 2.35% |
| All Indica | 784 | 95.79% | 4.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 95.62% | 4.38% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507097131 | C->T | LOC_Os05g12350(LOC_Os05g12350.1) | Non-Synonymous SNP |