Detailed information of SNP:
|
SNP ID:
sf0507097989(Gbrowse)
Chromosome: chr05 Position: 7097989 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 92.64% | 7.36% |
| All Indica | 728 | 86.95% | 13.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 335 | 85.07% | 14.93% |
| Indica II | 203 | 92.61% | 7.39% |
| Indica Intermediate | 190 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507097989 | A->C | LOC_Os05g12350(LOC_Os05g12350.1) | INTRON |