Detailed information of SNP:
|
SNP ID:
sf0507099590(Gbrowse)
Chromosome: chr05 Position: 7099590 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 61.69% | 38.31% |
| All Indica | 762 | 37.27% | 62.73% |
| All Japonica | 480 | 95.62% | 4.37% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 365 | 29.04% | 70.96% |
| Indica II | 192 | 48.96% | 51.04% |
| Indica Intermediate | 205 | 40.98% | 59.02% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 84 | 82.14% | 17.86% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507099590 | C->G | INTERGENIC | None |