Detailed information of SNP:
|
SNP ID:
sf0507099608(Gbrowse)
Chromosome: chr05 Position: 7099608 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 53.13% | 46.87% |
| All Indica | 753 | 75.56% | 24.44% |
| All Japonica | 472 | 12.29% | 87.71% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 354 | 76.55% | 23.45% |
| Indica II | 197 | 73.60% | 26.40% |
| Indica Intermediate | 202 | 75.74% | 24.26% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 82 | 39.02% | 60.98% |
| Japonica Intermediate | 61 | 27.87% | 72.13% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507099608 | C->A | INTERGENIC | None |