Detailed information of SNP:
|
SNP ID:
sf0507101013(Gbrowse)
Chromosome: chr05 Position: 7101013 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 66.31% | 33.69% |
| All Indica | 790 | 88.48% | 11.52% |
| All Japonica | 495 | 25.45% | 74.55% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507101013 | C->T | INTERGENIC | None |