Detailed information of SNP:
|
SNP ID:
sf0507108747(Gbrowse)
Chromosome: chr05 Position: 7108747 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.21% | 25.79% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 28.77% | 71.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507108747 | T->C | LOC_Os05g12360(LOC_Os05g12360.1) | INTRON |
| sf0507108747 | T->C | LOC_Os05g12360(LOC_Os05g12360.1) | SNPs that disrupt splice sites |