Detailed information of SNP:
|
SNP ID:
sf0507108918(Gbrowse)
Chromosome: chr05 Position: 7108918 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1200 | 90.00% | 10.00% |
| All Indica | 584 | 80.65% | 19.35% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 248 | 73.39% | 26.61% |
| Indica II | 186 | 95.16% | 4.84% |
| Indica Intermediate | 150 | 74.67% | 25.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507108918 | A->G | LOC_Os05g12360(LOC_Os05g12360.1) | INTRON |