Detailed information of SNP:
|
SNP ID:
sf0507114524(Gbrowse)
Chromosome: chr05 Position: 7114524 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.21% | 2.79% |
| All Indica | 795 | 97.48% | 2.52% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 55 | 69.09% | 30.91% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507114524 | C->T | INTERGENIC | None |