Detailed information of SNP:
|
SNP ID:
sf0507120905(Gbrowse)
Chromosome: chr05 Position: 7120905 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 73.88% | 26.12% |
| All Indica | 781 | 99.62% | 0.38% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 193 | 99.48% | 0.52% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507120905 | G->A | INTERGENIC | None |