Detailed information of SNP:
|
SNP ID:
sf0507128353(Gbrowse)
Chromosome: chr05 Position: 7128353 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.42% | 32.58% |
| All Indica | 798 | 69.80% | 30.20% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507128353 | G->A | INTERGENIC | None |