Detailed information of SNP:
|
SNP ID:
sf0507132746(Gbrowse)
Chromosome: chr05 Position: 7132746 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 62.78% | 37.22% |
| All Indica | 778 | 35.22% | 64.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 14.56% | 85.44% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 201 | 32.34% | 67.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507132746 | G->A | INTERGENIC | None |