Detailed information of SNP:
|
SNP ID:
sf0507139427(Gbrowse)
Chromosome: chr05 Position: 7139427 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.49% | 43.51% |
| All Indica | 798 | 33.46% | 66.54% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507139427 | A->G | LOC_Os05g12420(LOC_Os05g12420.1) | Synonymous |