Detailed information of SNP:
|
SNP ID:
sf0507140944(Gbrowse)
Chromosome: chr05 Position: 7140944 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.52% | 43.48% |
| All Indica | 799 | 33.42% | 66.58% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507140944 | G->A | LOC_Os05g12420(LOC_Os05g12420.1) | INTRON |