Detailed information of SNP:
|
SNP ID:
sf0507142221(Gbrowse)
Chromosome: chr05 Position: 7142221 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 797 | 35.26% | 64.74% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 15.51% | 84.49% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507142221 | A->G | LOC_Os05g12420(LOC_Os05g12420.1) | Non-Synonymous SNP |