Detailed information of SNP:
|
SNP ID:
sf0507143424(Gbrowse)
Chromosome: chr05 Position: 7143424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.23% | 41.77% |
| All Indica | 795 | 36.23% | 63.77% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 16.62% | 83.38% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 209 | 33.01% | 66.99% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507143424 | C->T | INTERGENIC | None |