Detailed information of SNP:
|
SNP ID:
sf0507148519(Gbrowse)
Chromosome: chr05 Position: 7148519 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 798 | 33.71% | 66.29% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 374 | 13.37% | 86.63% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507148519 | G->A | INTERGENIC | None |