Detailed information of SNP:
|
SNP ID:
sf0507148882(Gbrowse)
Chromosome: chr05 Position: 7148882 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.23% | 42.77% |
| All Indica | 798 | 34.46% | 65.54% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507148882 | A->T | INTERGENIC | None |