Detailed information of SNP:
|
SNP ID:
sf0507156507(Gbrowse)
Chromosome: chr05 Position: 7156507 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 80.49% | 19.51% |
| All Indica | 647 | 73.11% | 26.89% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 62 | 22.58% | 77.42% |
| Indica I | 281 | 84.34% | 15.66% |
| Indica II | 199 | 82.41% | 17.59% |
| Indica Intermediate | 167 | 43.11% | 56.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507156507 | A->T | INTERGENIC | None |