Detailed information of SNP:
|
SNP ID:
sf0507161247(Gbrowse)
Chromosome: chr05 Position: 7161247 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.42% | 28.58% |
| All Indica | 798 | 70.43% | 29.57% |
| All Japonica | 496 | 75.20% | 24.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 212 | 32.08% | 67.92% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507161247 | C->T | INTERGENIC | None |