Detailed information of SNP:
|
SNP ID:
sf0507169428(Gbrowse)
Chromosome: chr05 Position: 7169428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.01% | 31.99% |
| All Indica | 798 | 66.29% | 33.71% |
| All Japonica | 489 | 72.39% | 27.61% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 86.10% | 13.90% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 62 | 45.16% | 54.84% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507169428 | C->T | LOC_Os05g12481(LOC_Os05g12481.1) | UTR_5_PRIME |