Detailed information of SNP:
|
SNP ID:
sf0507191773(Gbrowse)
Chromosome: chr05 Position: 7191773 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.55% | 38.45% |
| All Indica | 799 | 33.92% | 66.08% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507191773 | G->T | INTERGENIC | None |