Detailed information of SNP:
|
SNP ID:
sf0507197458(Gbrowse)
Chromosome: chr05 Position: 7197458 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.28% | 41.72% |
| All Indica | 799 | 34.92% | 65.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 14.93% | 85.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507197458 | C->A | LOC_Os05g12524(LOC_Os05g12524.1) | INTRON |