Detailed information of SNP:
|
SNP ID:
sf0507210423(Gbrowse)
Chromosome: chr05 Position: 7210423 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 798 | 30.70% | 69.30% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 13.87% | 86.13% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 210 | 18.10% | 81.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507210423 | G->A | INTERGENIC | None |