Detailed information of SNP:
|
SNP ID:
sf0507223516(Gbrowse)
Chromosome: chr05 Position: 7223516 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.80% | 34.20% |
| All Indica | 799 | 69.34% | 30.66% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507223516 | G->A | INTERGENIC | None |